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screenshots from databases
Aug 11 2021

Featured Databases | Influenza Research Database and Virus Pathogen Resource

Posted on August 11, 2021 by Sarah Andrews

Access free to all Influenza Research Database: https://www.fludb.org
Access free to all Virus Pathogen Resource: https://www.viprbrc.org/

These have NIAID-funded resources that support viral pathogen research.  Data is integrated from GenBank, UniProt, Immune Epitope Database, Protein Data Bank and more.

screenshots from databases

Search and Retrieve Data
• Genomes, genes, proteins and annotations
• Mature peptide predictions from polyproteins
• Genotypes, subtypes and clades
• Influenza consensus sequences & polymorphism scores
• Protein ortholog groups
• Immune epitopes
• Sequence Features (SFs) including phenotype markers
• Surveillance, clinical and serology data
• 3D protein structures
• Host factor data
• Antiviral drug data
• Commonly-used PCR primers
• Computationally-derived data
• Sequence search API

Analyze and Visualize
• BLAST sequence similarity search
• Short peptide search
• Genome annotation including SF annotation
• Flavirvirus & Rotavirus genotype/subtype prediction
• Influenza H1 and H5 clade classification
• Influenza HA subtype numbering conversion
• Multiple sequence alignment
• Computationally intensive phylogenetics
• Metadata-driven Comparative Analysis Tool
• Sequence Variation (SNP) analysis
• Sequence Feature Variant Type (SFVT) analysis
• 3D protein structure visualization
• Host factor enrichment & network analysis
• PCR primer design

Save to Workbench
• Save and share private data and analysis results
• Share data and analysis results with collaborators
• Analyze your own data/metadata using IRD/ViPR tools

Sequence Submission
• Process sequence data for GenBank submission

 

Posted in ResourcesTagged GenBank, Influenza Research Database, Virus Pathogen Resource

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