Databases – Sciences Library News

Jan 15 2019

Welcome back, Hawkeyes!

Posted on January 15, 2019January 15, 2019 by Laurie Neuerburg

Welcome to the Spring 2019 Semester, Hawkeyes! Here are three tips to help you start your semester:

Check to see if your textbooks are on course reserve at the library

Visit the Sciences Library to study in a comfy bean bag chair, carrel, or table; to use our free scanner; and to enjoy free coffee and tea!

Need help with scientific literature databases such as arXiv, GeoRef, PubMed, or SciFinder? Make an appointment for a research consultation, or email us: laurie-neuerburg@uiowa.edu or leo-clougherty@uiowa.edu

Aug 29 2018

Fall 2018 Workshops at the Sciences Library

Posted on August 29, 2018August 30, 2018 by Laurie Neuerburg

The following workshops are open to all students, faculty, and staff. There is no need to register in advance.

Staying Current Workshop – Thursday, September 20, 3:30-4:20 PM, SL 102

In this workshop you will learn how to:

Keep up with the news and research in your field
Use the library to find new sources of information
Learn how to set up email alerts and notifications

EndNote Workshop – Tuesday, September 25, 11-11:50 AM, SL 102

In this workshop you will learn how to use EndNote to:

Collect references for articles, books, websites, and other sources using Google Scholar, InfoHawk+, and popular databases like Web of Science and Scopus;
Organize your references into groups and share your reference library with collaborators;
Use the Cite While You Write plugin for Microsoft Word to insert citations into your papers and format them into thousands of different styles.

EndNote Web is available for free to all members of the University of Iowa community. EndNote Desktop is available for free to all UI graduate students, faculty, and staff.

EndNote Workshop – Wednesday, October 10, 1-1:50 PM, SL 102

In this workshop you will learn how to use EndNote to:

Collect references for articles, books, websites, and other sources using Google Scholar, InfoHawk+, and popular databases like Web of Science and Scopus;
Organize your references into groups and share your reference library with collaborators;
Use the Cite While You Write plugin for Microsoft Word to insert citations into your papers and format them into thousands of different styles.

EndNote Web is available for free to all members of the University of Iowa community. EndNote Desktop is available for free to all UI graduate students, faculty, and staff.

Scholarly Journals Workshop – Tuesday, October 23, 11-11:50 AM, SL 102

In this workshop you will learn how to:

Identify the most critical journals in your field
Learn about impact factors and other measures of quality
Recognize important characteristics of journals, such as whether they are open access, refereed, or predatory

Evaluating Science Workshop – Thursday, November 1, 3:30-4:20 PM, SL 102

In this workshop you will learn how to:

Assess science articles and news for credibility
Look for original sources of research
Investigate misinformation, bias, and retractions

Search Strategies Workshop – Wednesday, November 14, 12-12:50 PM, SL 102

In this workshop you will learn how to:

Choose which places to search
Improve the relevancy and precision of your search
Quickly evaluate search results

If you’re interested, but unable to attend these workshops, private appointments and webinars can be arranged. If you have any questions or if you’d like to request a workshop for your class or group, please contact Laurie Neuerburg (319-467-0216 or laurie-neuerburg@uiowa.edu) for more information.

Aug 16 2018

Top 10 Things to Know About the Sciences Library

Posted on August 16, 2018 by Laurie Neuerburg

10. You can connect with us on Facebook and Twitter!

9. You can email, call, or schedule an appointment with one of our librarians (Laurie Neuerburg or Leo Clougherty) if you need help finding books, articles, or anything else for your research.

8. You can use our scanner on the 1st floor for free.

7. You can take a rest and study comfortably using our bean bag chairs, tables, armchairs, and carrels.

6. It’s easy to visit us from downtown–you will find us on Iowa Ave across from Joe’s Place.

5. Our mascot is a gorilla named Chauncey.

4. We can help you find datasets online and properly manage your own research data.

3. Our building was designed to be an anatomical theater for medical students and so the back of the building has a semicircular shape!

2. You can use our subject guides to find the best resources for your research in astronomy, biology, chemistry, environmental science, physics, and more.

1. We provide free coffee and tea!

Aug 10 2018

Natural Language Searching in NCBI Databases

Posted on August 10, 2018 by Laurie Neuerburg

NCBI has improved its search functionality in the “all databases” search to be compatible with natural language searching. In the past, natural language searching for sequence data brought up too many results or sometimes zero results. Now you can search NCBI more intuitively than before and receive good results for genes, nucleotides, and assemblies! How do you get started with NCBI’s new natural language searching?

Go to the homepage of NCBI. The default search shows “All Databases” in the drop-down box. Here you can try out some of the improved search queries:

Genes

[Species name] + [gene symbol]
- Chelonia mydas SDHA

Rat B2M

Nucleotide Sequences

[Species name] + [gene symbol] + mRNA/transcript/CDS
- Salmo salar SUMO1 mRNA

Mus musculus Abcg2 transcript

Cow CA2 CDS

Genome Assemblies

[Assembly name]
- GRCz11

[species name] + assembly/genome
- Chicken assembly

Escherichia coli genome

Summer 2018 Sciences Library Workshops, Model of atom symbol

Jun 22 2018

Summer Workshops at the Sciences Library

Posted on June 22, 2018June 27, 2018 by Laurie Neuerburg

The following workshops are open to all students, faculty, and staff. There is no need to register in advance.

EndNote Workshop – Wednesday, July 18, 2-3 PM, Chemistry Building, W258

In this workshop you will learn how to use EndNote to:

Collect references for articles, books, websites, and other sources using Google Scholar, InfoHawk+, and popular databases like Web of Science and Scopus;
Organize your references into groups and share your reference library with collaborators;
Use the Cite While You Write plugin for Microsoft Word to insert citations into your papers and format them into thousands of different styles.

EndNote Web is available for free to all members of the University of Iowa community. EndNote Desktop is available for free to all UI graduate students, faculty, and staff.

Biology Databases Workshop – Wednesday, July 25, 2-3 PM, Biology Building, B20

In this workshop you will learn how to:

Use BioCyc to research metabolic pathways and genome databases.
Find articles in BIOSIS Citation Index using advanced searching, combinations of searches, and alerts.
Identify the most important biological research articles on your topics of interest using Faculty of 1000 (F1000).

Jun 08 2018

BioCyc: A Collection of Pathway/Genome Databases

Posted on June 8, 2018June 8, 2018 by Laurie Neuerburg

We now have access to BioCyc, a collection of Pathway/Genome Databases (PGDBs). You can search BioCyc by gene, protein, enzyme, or metabolic pathway. You can use advanced tools to view metabolic diagrams, to perform data analysis, and to compare organisms. You can register for a free BioCyc account if you would like to customize your viewing preferences, to create SmartTables to store datasets, and to run and save metabolic models. You can export high-quality metabolic diagrams and create your own PGDB from an annotated genome file.

These organism-specific databases are divided into three tiers based upon the level of data curation, with tier 1 databases having the highest level of curation by scientists. Tier 2 databases have had moderate curation, and tier 3 databases are computationally created with no curation. Examples of the most popular tier 1 databases are Escherichia coli K-12 substr. MG1655 (EcoCyc), Homo sapiens, and Saccharomyces cerevisiae S288c. When you start out in BioCyc, the default organism database is E. coli K-12. To change to a different database, you can click on “change organism database” at the top right of the page. After you choose a new database, you are taken to a summary page for the database. Then you can click on a chromosome (or genome) to view annotations in the genome browser.