Archive for May, 2010

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Transitions: scholarly communication news for the UI Community (May 2010)

May 2010
Issue 2.10

Welcome to the spring issue of Transitions.

The purpose of this irregular electronic newsletter is to bring to readers’ attention some of the many new projects and developments informing the current system of scholarly communication, with emphasis on new products and programs, the open access movement, and other alternative publishing models. Scholarly communication refers to the full range of formal and informal means by which scholars and researchers communicate, from email discussion lists to peer-reviewed publication. In general, authors are seeking to document and share new discoveries with their colleagues, while readers–researchers, students, librarians and others–want access to all the literature relevant to their work.

While the system of scholarly communication exists for the benefit of the world’s research and educational community and the public at large, it faces a multitude of challenges and is undergoing rapid change brought on by technology. To help interested members of the UI community keep up on these challenges and changes we plan to put out 4 issues per year of this newsletter.  Please visit our web site, Transforming Scholarly Communication, to find out more about this topic.

This newsletter is designed to reflect the interests of its readers so please forward comments, suggestions and entries to include to karen-fischer@uiowa.edu.

Read these articles in our May newsletter:

Federal Research Public Access Act: Updates and Commentaries

Open Access to Scientific Publications: the good, the bad, and the ugly

Opening the Doors to Research: Open Access is changing the way we learn about research

NYTimes OpEd on copyright: The End of History (Books)

Wikipedia Lets You Order Printed Books

Lessig: “For the Love of Culture: Google, Copyright, and Our Future”

Google Starts Grant Program for Scholars of Digitized Books

Peer review: What is it good for?

Publisher seeks patent related online peer review and publishing process

Commercial Publisher Financial Results

Open Science: some new developments

Harvard Business School approves open access policy

Assessing the Future Landscape of Scholarly Communication: report on faculty values and needs

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Federal Research Public Access Act: Updates and Commentaries

Since the Federal Reseach Public Access Act has been recently come before the House of Representatives and the Senate, there has been a flurry of articles (for and against) the legistlation.

Federal Research Access Bill Making Progress in Congress,  Library Journal.com, 4/22/2010

excerpt:

Baby steps toward legislation: the broad open access mandate known as The Federal Research Public Access Act (FRPAA) is now before the House of Representatives as well as the Senate, following its introduction by Rep. Mike Doyle (D-PA) last week. Both versions are substantially the same, and with the bill now before both legislative bodies, has at least the potential of becoming law.

During prepared remarks on a press conference call Wednesday morning hosted by the Alliance for Taxpayer Access, Doyle said, “I hope that we can move this bill through Congress before the end of the year.”

. . . FRPAA was re-introduced into the Senate last year. It would require every federal department and agency with an annual extramural research budget of $100 million or more to make their research available to the public within six months of publication. (A similar bill, introduced in the Senate in 2006, died in committee.)

The bill covers all unclassified research funded by agencies including the Departments of Agriculture, Commerce, Defense, Education, Health and Human Services, Homeland Security, Transportation, Environmental Protection, as well as the National Science Foundation and NASA.

The bill also would ostensibly trump the current 12-month embargo specified by the National Institutes of Health (NIH) mandate—on which FRPAA is directly modeled—by rolling the embargo period back to six months.

SPARC FAQ for University Administrators and Faculty – SPARC has put together a helpful FAQ to answer the most pressing questions about FRPAA.

  1. What does the legislation entail?
  2. Who will be affected?
  3. What does the legislation mean for investigators?
  4. What does it mean for higher education institutions?
  5. Why is this legislation needed?
  6. Couldn’t agencies do this without legislative action?
  7. Is the legislation a threat to journals and the peer review they perform?
  8. Will the availability of multiple versions of an article create problems?
  9. Will this legislation take funding away from research?
  10. Does this legislation affect copyright or patent laws?
  11. How can I support the bill and where can I get more information about it?

Provosts and Presidents of 27 Major Research Institutions Support FRPAA – In “The Open Letter to the Higher Education Community” issued by the Harvard University Provost, the provosts (including UI’s Wallace Loh) and presidents of 27 major research institutions have indicated their strong support for the Federal Research Public Access Act.

excerpt:

The United States Congress will have the opportunity to consider the Federal Research Public Access Act (FRPAA). FRPAA would require Federal agencies whose extramural research budgets exceed $100 million to develop policies ensuring open, public access to the research supported by their grants or conducted by their employees. This Bill embodies core ideals shared by higher education, research institutions and their partners everywhere. The Bill builds upon the success of the first U.S. policy for public access to publicly funded research – implemented in 2008 through the National Institutes of Health – and mirrors the intent of campus-based policies for research access that are being adopted by a growing number of public and private institutions across the nation.

We believe that this legislation represents a watershed and provides an opportunity for the entire U.S. higher education and research community to draw upon their traditional partnerships and collaboratively realize the unquestionably good intentions of the Bill’s framers – broadening access to publicly funded research in order to accelerate the advancement of knowledge and maximize the related public good. By ensuring broad and diverse access to taxpayer-funded research the Bill also supports the intuitive and democratic principle that, with reasonable exceptions for issues of national security, the public ought to have access to the results of activities it funds.

The broad dissemination of the results of scholarly inquiry and discourse is essential for higher education to fulfill its long-standing commitment to the advancement and conveyance of knowledge. Indeed, it is mission critical. For the land-grant and publicly funded institutions among us, it addresses the complementary commitment to public service and public access that is included in our charters. In keeping with this mission, we agree with FRPAA’s basic premise that enabling the broadest possible access to new ideas resulting from government-funded research promotes progress, economic growth, and public welfare. Furthermore, we know that, when combined with public policy such as FRPAA proposes, the Internet and digital technology are powerful tools for removing access barriers and enabling new and creative uses of the results of research.

Letter Opposing FRPPA – The Association of American Publishers and the DC Principles Coalition released their April 29 letter to the House Committee on Oversight & Government Reform, opposing FRPAA.

excerpt:

On behalf of many publisher members of the Professional and Scholarly Publishing division of the Association of American Publishers, the DC Principles Coalition, and other leading publishers, we are writing to express our strong opposition to the Federal Research Public Access Act, H.R. 5037. This bill would require that final manuscripts of peer-reviewed, private-sector journal articles reporting on federally-funded research be made freely available on government-run websites no later than six months after publication. This unnecessary legislation would undermine copyright and adversely impact the existing peer review system that ensures the high quality of scientific and other scholarly research in the United States. In addition, it would impose costly new mandates on federal agencies.

The diverse publishers whose concerns are shared by the undersigned are responsible for coordinating the publication of thousands of journals reporting on basic research and original scholarship, disseminating collectively tens of thousands of refereed research articles by U.S.-funded researchers annually. H.R. 5037 would diminish copyright protections for these private-sector scientific journal articles. The government mandate proposed by this legislation would result in the government distribution of copyrighted journal articles without compensation. Copyright is essential to protecting these works and to preserving incentives for the private sector to continue to invest in peer review, editing, publishing, and maintaining the electronic record of vetted scientific journal articles.

A Scholarly Kitchen Blog post, by Philip Davis, states:

While much is known about how researchers make use of the scientific literature, much less is known about the consumption of scientific literature by the general public.  Other than anecdotal descriptions — say, of patients bringing medical literature they found online into the doctor’s office — little is known about how the lay public uses the primary literature (e.g., scholarly journal articles) compared to public-focused websites, blogs, and discussion lists.

What is known is that Americans are going online seeking health information.

Read on at: http://scholarlykitchen.sspnet.org/2010/04/22/frpaa-science-and-the-public-good/

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Open Access to Scientific Publications: the good, the bad, and the ugly

Open Access to Scientific Publications: The good, the bad, and the ugly, Communications of the ACM , by Michel Beaudouin-Lafon:

The opening:

In his July 2009 Communications editor’s letter “Open, Closed, or Clopen Access?”, editor-in-chief Moshe Vardi addressed the question of open access to this magazine and to ACM (Association for Computing Machinery) publications in general. Scientific publishing, like all areas of publishing, is undergoing major changes. One reason is the advent of the Internet, which fosters new types of publishing models. Another less-known factor is the exponential increase in the number of scientific publications (see the figure here), which has turned this area into a serious business. In this column, I take a look at commercial and Open Access publishing, and at the role that professional societies such as ACM can play in this evolving world.

Excerpt from the conclusion:

Open Access is a valuable goal, but the scientific community is overly naive about the whole business of scientific publishing. Societies and nonprofit organizations need to continue to lead the way to improve the dissemination of research results, but the scientific community at large must support them against the business-centric views of commercial publishers.

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Opening the Doors to Research: Open Access is changing the way we learn about research

Opening the Doors to Research: Open Access is changing the way we learn about research discoveries, University of Toronto Medicine, v. 5, issue 3, Feb 2010

Article starts on p. 15.

Excerpt:

James Till, the University of Toronto Emeritus Professor of Medical Biophysics best known for demonstrating—with Ernest McCulloch, Emeritus Professor of Medicine—the existence of stem cells, is the type of high-profile researcher best served by the traditional system of peer-review publishing. Yet he is one of the strongest advocates for the alternative open access (OA) movement that is gaining momentum in the research world.

“In biomedical science, open resources like PubMed (a biomedical search engine from the U.S. National Library of Medicine) and GenBank (a collection of all the publicly available nucleotide sequences and their protein translations) have helped researchers to understand and appreciate the benefits of OA.
There has also been increasing recognition that OA has the potential to foster collaborations in multidisciplinary areas, including collaborations of the kind needed to accelerate the translation of new knowledge into innovative practical applications,”according to Till.

. . .Research carried out by U of T Professor Gunther Eysenbach (Department of Health Policy, Management and Evaluation and a senior scientist at the University Health Net¬work) found three main advantages to making medical research openly accessible: faster uptake within a discipline, measureable by citations; increased knowledge transfer to other disciplines; and increased information transfer to other end users who would not normally read scientific journals, including policy makers, physicians and patients. Many funding agencies worldwide have started to see these advantages, and are introducing policies that encourage open access to research results they have supported.

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NYTimes OpEd on copyright: The End of History (Books)

From the New York Times, April 2, 2010

By March Aronson

Excerpt:

Speaking as an author and editor of illustrated nonfiction, I agree that important change is afoot, but not in the way most people see it. In order for electronic books to live up to their billing, we have to fix a system that is broken: getting permission to use copyrighted material in new work. Either we change the way we deal with copyrights — or works of nonfiction in a multimedia world will become ever more dull and disappointing.

The hope of nonfiction is to connect readers to something outside the book: the past, a discovery, a social issue. To do this, authors need to draw on pre-existing words and images.

The full article is at: http://www.nytimes.com/2010/04/03/opinion/03aronson.html?emc=eta1

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Wikipedia Lets You Order Printed Books

Wikipedia’s launching a new feature for English readers: The ability to create custom books from Wikipedia’s huge bank of free content. Because of the way Wikipedia’s images and copy are licensed, they’re free for anyone to access, use and share in this way.

PediaPress is a book publisher for wiki content; it’s in a long-term business relationship with Wikipedia (Wikipedia) to print these books. PediaPress now offers paperbacks and will soon add hardcover books to its catalog, as well.

The price of each book varies, depending on the number of pages; paperbacks start at $8.90. Users can also simply download a PDF of the “books” they create.

Read the article on Mashable and view an explanatory video at: http://mashable.com/2010/05/06/wikipedia-books/

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Lessig: “For the Love of Culture: Google, Copyright, and Our Future”

Lawrence Lessig published “For the Love of Culture: Google, Copyright, and Our Future” in The New Republic (Jan 26, 2010).

Excerpt:

There is much to praise in this settlement [Google Books Settlement]. Lawsuits are expensive and uncertain. They take years to resolve. The deal Google struck guaranteed the public more free access to free content than “fair use” would have done. Twenty percent is better than snippets, and a system that channels money to authors is going to be liked much more than a system that does not. (Not to mention that the deal is elegant and clever in ways that a contracts professor can only envy.)

Yet a wide range of companies, and a band of good souls, have now joined together to attack the Google settlement. Some charge antitrust violations. Some fear that Google will collect information about who reads what—violating reader privacy. And some just love the chance to battle this decade’s digital giant (including last decade’s digital giant, Microsoft). The main thrust in almost all of these attacks, however, misses the real reason to be concerned about the future that this settlement will build. For the problem here is not just antitrust; it is not just privacy; it is not even the power that this (enormously burdensome) free library will give this already dominant Internet company. Indeed, the problem with the Google settlement is not the settlement. It is the environment for culture that the settlement will cement.

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Google Starts Grant Program for Scholars of Digitized Books

From the Wired Campus (Chronicle of Higher Education), March 31, 2010

Even as a lawsuit over Google’s book-digitization project remains up in the air, the search giant has quietly started reaching out to universities in search of humanities scholars who are ready to roll up their sleeves and hit the virtual stacks.

The company is creating a “collaborative research program to explore the digital humanities using the Google Books corpus,” according to a call for proposals obtained by The Chronicle. Some of Google’s academic partners say the grant program marks the company’s first formal foray into supporting humanities text-mining research.

The call went out to a select group of scholars, offering up to $50,000 for one year. Google says it may choose to renew the grants for a second year. It is not clear whether anybody can apply for the money, or just the group that got the solicitation.

The effort seems largely focused on building tools to comb and improve Google’s digital library, whose book-search metadata—dates and other search-assisting information—one academic researcher calls a “train wreck.” These are some of the sample projects that Google lists in its call for proposals:

• Building software for tracking changes in language over time.

• Creating utilities to discover books and passages of interest to a particular discipline.

• Developing systems for crowd-sourced corrections to book data and metadata.

• The testing of a literary or historical hypothesis through innovative analysis of a book.

For more details of the program, read the full Chronicle story.

http://chronicle.com/article/Google-Starts-Grant-Program/64891/

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Peer review: What is it good for?

Peer review: What is it good for?, Science in the Open, 5 Feb 2010, posted by Cameron Neylon:

Excerpts:

There remains much reverence of the traditional process of peer review. I may be over interpreting the tenor of Andrew Morrison’s editorial in BioEssays but it seems to me that he is saying, as many others have over the years “if we could just have the rigour of traditional peer review with the ease of publication of the web then all our problems would be solved”.  Scientists worship at the altar of peer review, and I use that metaphor deliberately because it is rarely if ever questioned. Somehow the process of peer review is supposed to sprinkle some sort of magical dust over a text which makes it “scientific” or “worthy”, yet while we quibble over details of managing the process, or complain that we don’t get paid for it, rarely is the fundamental basis on which we decide whether science is formally published examined in detail.

. . .Whatever value [peer review] might have we largely throw away. Few journals make referee’s reports available, virtually none track the changes made in response to referee’s comments enabling a reader to make their own judgement as to whether a paper was improved or made worse. Referees get no public credit for good work, and no public opprobrium for poor or even malicious work. And in most cases a paper rejected from one journal starts completely afresh when submitted to a new journal, the work of the previous referees simply thrown out of the window.

. . .Journals need to acknowledge the papers they’ve rejected, along with dates of submission. Ideally all referees reports should be made public, or at least re-usable by the authors. If full publication, of either the submitted form of the paper or the referees report is not acceptable then journals could publish a hash of the submitted document and reports against a local key enabling the authors to demonstrate submission date and the provenance of referees reports as they take them to another journal.

In my view referees need to be held accountable for the quality of their work. If we value this work we should also value and publicly laud good examples. And conversely poor work should be criticised.

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Publisher seeks patent related online peer review and publishing process

Nature News, 7 May 2010, by Declan Butler:

Excerpt:

A scientist in Switzerland is seeking to patent a system for peer reviewing and publishing scientific papers online, Nature  has learned.

Henry Markram, a neuroscientist and publishing entrepreneur who works at the Ecole Polytechnique Fédérale de Lausanne (EPFL) in Switzerland, last year filed internationally for a broad patent on systems for interactive online peer review and publishing open-access journals.

The application, says Markram, was filed mainly to protect a fleet of author-pays, open-access journals published by the Lausanne-based Frontiers Media, a company he created in 2008 with his wife Kamila Markram, another neuroscientist at the EPFL.

…The main innovative features of both the journals and the patent, says Markram, are real-time evaluation of papers and a high degree of automation. Software matches articles to potential reviewers, and authors and referees discuss comments and revisions in an online forum, for example.

The result is just like an Internet discussion group, with editors and authors able to follow comment threads in real time, says Robert Harvey, a molecular neuroscientist at the School of Pharmacy, University of London, who has experience of Frontiers journals as both an editor and an author.