{"id":6166,"date":"2016-10-19T14:44:35","date_gmt":"2016-10-19T14:44:35","guid":{"rendered":"https:\/\/blog.lib.uiowa.edu\/needtoknow\/?p=1053"},"modified":"2016-10-19T14:44:35","modified_gmt":"2016-10-19T14:44:35","slug":"is-chocolate-a-food-a-problem-in-pubmed-2016-update-2","status":"publish","type":"post","link":"https:\/\/blog.lib.uiowa.edu\/combo\/2016\/10\/19\/is-chocolate-a-food-a-problem-in-pubmed-2016-update-2\/","title":{"rendered":"Is Chocolate A Food? A Problem In PubMed \u2013 2016 Update"},"content":{"rendered":"<p><img loading=\"lazy\" decoding=\"async\" width=\"150\" height=\"150\" src=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-150x150.jpg\" class=\"attachment-thumbnail size-thumbnail wp-post-image\" alt=\"\" srcset=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-150x150.jpg 150w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-36x36.jpg 36w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-115x115.jpg 115w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-32x32.jpg 32w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-50x50.jpg 50w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-64x64.jpg 64w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-96x96.jpg 96w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-128x128.jpg 128w\" sizes=\"(max-width: 150px) 100vw, 150px\" \/><\/p>\n<p dir=\"ltr\"><a href=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFFcrop3.jpg\"><img loading=\"lazy\" decoding=\"async\" class=\"wp-image-1080 size-full aligncenter\" src=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFFcrop3.jpg\" alt=\"chocolatebgfffcrop3\" width=\"853\" height=\"376\" srcset=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFFcrop3.jpg 853w, https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFFcrop3-300x132.jpg 300w\" sizes=\"(max-width: 853px) 100vw, 853px\" \/><\/a><\/p>\n<p dir=\"ltr\" style=\"text-align: center\"><em>Because most plant-based foods are under &#8220;plants&#8221; instead of &#8220;food&#8221; in PubMed, articles on chocolate may not be retrieved in a search for Food.<\/em><\/p>\n<p dir=\"ltr\">By Eric Rumsey, Janna Lawrence and Xiaomei Gu<\/p>\n<p dir=\"ltr\"><span style=\"font-weight: 400\">As we\u2019ve <\/span><a href=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/2016\/09\/02\/plant-based-foods-a-tricky-pubmed-search-revised-2016\/\"><span style=\"font-weight: 400\">written<\/span><\/a><span style=\"font-weight: 400\">, searching for plant-based foods (PBFs) in PubMed is difficult because of the way the MeSH system is organized. This is especially the case because because in most cases PBFs are treated as plants rather than food.<\/span><\/p>\n<p>One result of treating plant-based foods as plants is that the MeSH term is usually the botanical plant name; in the case of chocolate it\u2019s <em>Cacao<\/em>. This is usually not a serious problem when searching for specific substances because the common food name maps to the botanical MeSH term.<\/p>\n<p dir=\"ltr\">A more serious consequence of treating plant-based foods as plants instead of foods is that they are usually not in any food-related <a href=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/2013\/09\/19\/pubmeds-secret-ingredient-explosions\/\">explosion<\/a>, but only in the <em>Plants<\/em> explosion. So the only occurrence of chocolate (<em>Cacao<\/em>) is here:<\/p>\n<pre style=\"padding-left: 60px\">Plants\r\n   Angiosperms\r\n      Sterculiaceae\r\n         Cacao<\/pre>\n<p>The reason this is a problem is because articles on chocolate\/<em>Cacao<\/em> will not be retrieved in a search for <em>Food<\/em>. So, for example, if you do a general search for food-related causes of migraine, you will not retrieve this article:<\/p>\n<p style=\"padding-left: 90px\">Chocolate is a migraine-provoking agent<br \/>\nJournal: Cephalalgia<br \/>\n<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/1860135\">http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/1860135<\/a><\/p>\n<p>This is not retrieved by searching for food because <em>Cacao<\/em> is not in the <em>Food<\/em> explosion. More broadly, however, it\u2019s also not retrieved\u00a0by the\u00a0<span style=\"font-weight: 400\"><a href=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/2016\/03\/18\/food-diet-nutrition-how-to-search-in-pubmed\/\"><em>Diet, Food, and Nutrition<\/em><\/a>\u00a0explosion.<\/span><\/p>\n<p dir=\"ltr\">Here are several other articles on health and medical aspects of chocolate that are <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/?term=chocolate+not+Diet%2C+Food%2C+and+Nutrition+%5Bmh%5D\">not retrieved<\/a> by the\u00a0broad <span style=\"font-weight: 400\"><em>Diet, Food, and Nutrition<\/em> explosion<\/span>:<\/p>\n<ul>\n<li>Chocolate consumption modulates cytokine production in healthy individuals.<br \/>\nJournal: Cytokine.<br \/>\n<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23465690\">http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23465690<\/a><\/li>\n<li>Protective effects of flavanol-rich dark chocolate on endothelial function and wave reflection during acute hyperglycemia.<br \/>\nJournal: Hypertension.<br \/>\n<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22851734\">http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22851734<\/a><\/li>\n<li>Chocolate and coronary heart disease: a systematic review.<br \/>\nJournal: Curr Atheroscler Rep.<br \/>\n<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21894553\">http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21894553<\/a><\/li>\n<li>Supraventricular tachycardia induced by chocolate: is chocolate too sweet for the heart?<br \/>\nJournal: Am J Emerg Med.<br \/>\n<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21871761\">http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21871761<\/a><\/li>\n<li>Chocolate consumption in pregnancy and reduced likelihood of preeclampsia.<br \/>\nJournal: Epidemiology.<br \/>\n<a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18379424\">http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/18379424<\/a><\/li>\n<\/ul>\n<p>If chocolate were the only case of a plant-based food that is not retrieved in a broad PubMed search for food-related topics, it would be a trivial matter. But that\u2019s far from being the case. There are many plant-based foods that have the same problem in PubMed. We have <a href=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/?s=food+problem\">written<\/a> about a few of these.<\/p>\n<p><span style=\"font-weight: 400\">[Image above is licensed under Creative Commons, from <\/span><a href=\"https:\/\/commons.wikimedia.org\/wiki\/File:Chocolate(bgFFF).jpg\"><span style=\"font-weight: 400\">WikiMedia<\/span><\/a><span style=\"font-weight: 400\">]<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p><img loading=\"lazy\" decoding=\"async\" width=\"150\" height=\"150\" src=\"https:\/\/blog.lib.uiowa.edu\/needtoknow\/files\/2016\/10\/ChocolatebgFFF-150x150.jpg\" alt=\"\">Because most plant-based foods are under &ldquo;plants&rdquo; instead of &ldquo;food&rdquo; in PubMed, articles on chocolate may not be retrieved in a search for Food. By Eric Rumsey, Janna Lawrence and [&hellip;]<\/p>\n","protected":false},"author":167,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[],"tags":[],"_links":{"self":[{"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/posts\/6166"}],"collection":[{"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/users\/167"}],"replies":[{"embeddable":true,"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/comments?post=6166"}],"version-history":[{"count":1,"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/posts\/6166\/revisions"}],"predecessor-version":[{"id":6167,"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/posts\/6166\/revisions\/6167"}],"wp:attachment":[{"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/media?parent=6166"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/categories?post=6166"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blog.lib.uiowa.edu\/combo\/wp-json\/wp\/v2\/tags?post=6166"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}