Transitions

Scholarly communication news for the UI community - May 2008

May 29th, 2008 by Karen Fischer

May 2008
Issue 2.08

Welcome to the Spring issue of Transitions.

The purpose of this irregular electronic newsletter is to bring to readers’ attention some of the many new projects and developments affecting the current system of scholarly communication, with emphasis on new products and programs, the open access movement and other alternative publishing models. Scholarly communication refers to the full range of formal and informal means by which scholars and researchers communicate, from email discussion lists to peer-reviewed publication. In general authors are seeking to document and share new discoveries with their colleagues, while readers–researchers, students, librarians and others–want access to all the literature relevant to their work.

While the system of scholarly communication exists for the benefit of the world’s research and educational community and the public at large, it faces a multitude of challenges and is undergoing rapid change brought on by technology. To help interested members of the UI community keep up on these challenges and changes we plan to put out 4-6 issues per year of this newsletter.

This newsletter aims to reflect the interests of its readers so please forward comments, suggestions and entries to include to karen-fischer@uiowa.edu. Also, read the health sciences counterpart to Transitions: Hardin Scholarly Communication News.

Table of Contents:
Harvard FAS and Law School Pass Open Access Mandates
Rockefeller University Press Gives Away Copyright on Journal Articles
New Open Access Humanities Press Makes Its Debut
Prices and Ratings of Economic Textbooks
Comparison of SCImago Journal Rank Indicator with Journal Impact Factor
Progress Towards Public Access to Science - Harold Varmus on NIH Policy
Journals Find Fakery in Many Images Submitted to Support Research
Converting High Energy Physics Publishing from Subscription to Open Access
Access to Legal Scholarship
Online Company Tries an Unexpected Publishing Model: Free Textbooks
Positive Review of Library and Info Science Repository
The Importance of Open Access for Taxonomy Research

Harvard FAS and Law School Pass Open Access Mandates

May 29th, 2008 by Karen Fischer

A Shot Heard ‘Round the Academic World: Harvard FAS Mandates Open Access

In a historic measure, the Harvard University Faculty of Arts and Sciences (FAS) in February unanimously approved a motion that compels Harvard researchers to deposit their “scholarly articles” in an open access (OA) repository to be managed within the library and to be made freely available to anyone via the Internet. Faculty members, however, can opt-out of compliance by obtaining a waiver, a point some OA advocates say could potentially undermine the policy’s effectiveness. Nevertheless, the Harvard vote provided a resonant “shot heard ’round the world” for the open access movement.

“This is a large and very important step,” said Stuart Shieber, professor of computer science at Harvard, who put forth the motion. “It should be a very powerful message to the academic community that we want and should have more control over how our work is used and disseminated.” In a statement released following the vote, Shieber cited serials costs that have “risen to such astronomical levels,” forcing cancellations and “reducing the circulation of scholars’ works.”

Specifically, the Harvard motion resembles a publishing contract of sorts; it compels faculty to give Harvard non-exclusive, irrevocable permission to distribute their articles online, which Harvard intends to do, as well as permitting others to use the works as well, as long as those uses are non-profit. In legal terms, the permission granted by each Faculty member is “a nonexclusive, irrevocable, paid-up, worldwide license to exercise any and all rights under copyright relating to each of his or her scholarly articles, in any medium, and to authorize others to do the same, provided that the articles are not sold for a profit.” Faculty members retain their copyrights in the articles, subject to the university’s license and are free to publish in other journals. The legislation does not apply to articles completed before adoption of the motion, and does not apply to Harvard’s professional schools.

Curiously, the policy also, “when preferable,” allows faculty to opt-out of compliance. All one has to do, is ask. “The policy specifies that a waiver of the license for an article will be granted by request of the faculty author,” Shieber told the LJ Academic Newswire. “This is in keeping with the principle that the policy should serve the faculty, and faculty members are in the best position to determine that in individual cases.”

Critics, however, including OA pioneer Stevan Harnad, questioned whether “potential author resistance to perceived or actual constraints on their choice of which journal to publish in,” could hamper the policy—in other words, if the most prestigious journal in a researchers’ field requires exclusivity, will that be enough to motivate a researcher to opt-out?

Valid questions, among many others, that will surely be examined in practice: the motion provides for an analysis of the legislation’s effectiveness, with a report to be delivered in three years. “There are of course many details of implementation still being worked on,” Shieber told the Newswire. “In general, these will be worked out under the principle of serving the faculty best in the distribution of their scholarly writings.”

Following suit, the Harvard Law School unanimously voted to mandate OA on May 7th.

From Harvard Law School Press Release:

In a move that will disseminate faculty research and scholarship as broadly as possible, the Harvard Law School faculty unanimously voted last week to make each faculty member’s scholarly articles available online for free, making HLS the first law school to commit to a mandatory open access policy.

“The Harvard Law School faculty produces some of the most exciting, groundbreaking scholarship in the world,” said Dean Elena Kagan ‘86. “Our decision to embrace ‘open access’ means that people everywhere can benefit from the ideas generated here at the Law School.”

Under the new policy, HLS will make articles authored by faculty members available in an online repository, whose contents would be searchable and available to other services such as Google Scholar. Authors can also legally distribute the articles on their own websites, and educators here and elsewhere can freely provide the articles to students, so long as the materials are not used for profit.

“This exciting development is something in which the whole Harvard Law School community can take great pride,” said John Palfrey ‘01, executive director of the Berkman Center for Internet & Society and newly appointed vice dean of library and information resources. “The acceptance of open access ensures that our faculty’s world-class scholarship is accessible today and into the future. I look forward to the work of implementing this commitment.”

The vote came after an open access proposal was made by a university-wide committee aimed at encouraging wider dissemination of scholarly work. Earlier this semester, the Faculty of Arts and Sciences voted to adopt a policy similar to the Law School’s new initiative.

Similar initiatives are underway to promote free and open access to scholarly articles elsewhere, although no initiative extends as far as Harvard’s. Legislation before Congress would mandate that all federally funded research be available in open access.

Library Journal Academic Newswire, Feb. 14, 2008
Harvard Law School Press Release, May 7, 2008

Rockefeller University Press Gives Away Copyright on Journal Articles

May 29th, 2008 by Karen Fischer

It may be a first for scientific journals that are not published under an open-access philosophy: Rockefeller University Press has announced that it will allow authors to retain copyright to the papers they publish in its three journals.

Under the new policy, instead of giving up their copyrights to the journals, authors will now provide the journals with licenses to publish their papers. The authors may reuse their work any way they like, as long as they provide attribution to the journals. Six months after publication, third parties may use and redistribute the papers under a Creative Commons license.

The press places one thing off-limits: creating Web sites that mirror the contents of a journal within six months of its publication. The press hopes to retain subscribers because of that six-month delay.

In the world of scientific publishing, the three journals — The Journal of Cell Biology, The Journal of Experimental Medicine, and The Journal of General Physiology — may be unique in that they are maintaining subscription access but are giving up copyright. Many open-access scientific journals also allow authors to keep copyright. —Lila Guterman

The Chronicle News Blog, May 5, 2008

Emma Hill and Mike Rossner, You wrote it; you own it! Journal of Cell Biology, April 30, 2008. An editorial. Excerpt:

Authors of papers published in Rockefeller University Press journals (The Journal of Cell Biology, The Journal of Experimental Medicine, or The Journal of General Physiology) now retain copyright to their published work. This permits authors to reuse their own work in any way, as long as they attribute it to the original publication. Third parties may use our published materials under a Creative Commons license, six months after publication….

Preying on authors’ desire to publish, and thus their willingness to sign virtually any form placed in front of them, scientific publishers have traditionally required authors to sign over the copyright to their work before publication….

At The Rockefeller University Press, we have followed this tradition in the past and obtained copyright from authors as a condition of publication. Several years ago, however, we recognized that the advent of the internet had irrevocably changed the nature and mechanisms of knowledge distribution, and we returned some of those rights to authors. Since July 2000, we have allowed our authors to freely distribute their published work by posting the final, formatted PDF version on their own websites immediately after publication.

With the growing demand for public access to published data, we recently started depositing all of our content in PubMed Central. In a further step to enhance the utility of scientific content, we have now decided to return copyright to our authors. In return, however, we require authors to make their work available for reuse by the public. Instead of relinquishing copyright, our authors will now provide us with a license to publish their work. This license, however, places no restrictions on how authors can reuse their own work; we only require them to attribute the work to its original publication. Six months after publication, third parties (that is, anyone who is not an author) can use the material we publish under the terms of the Creative Commons Attribution-Noncommercial-Share Alike 3.0 Unported License….

The Creative Commons License will apply retroactively to all work published by The Rockefeller University Press before November 1, 2007….Authors who previously assigned their copyright to the Press are now granted the right to use their own work in any way they like, as long as they acknowledge the original publication….

Full text of our new copyright policy is available here.

New Open Access Humanities Press Makes Its Debut

May 29th, 2008 by Karen Fischer

Jennifer Howard, writing in The Chronicle of Higher Education, reports that a new venture with prominent academic backers wants to help humanists put their work online.

Open Humanities Press, will open it’s doors on May 12 with the publication of seven peer-reviewed journals, which have established track records as open access titles.:
Cosmos and History (2005-)
Culture Machine (1999-)
Fibreculture (2003-)
Film-Philosophy (1997-)
International Journal of Žižek Studies (2007-)
Parrhesia (2006-)
Vectors (2005-)

From the OHP website: “Open Humanities Press journals are fully peer reviewed, scholarly publications that have been chosen by OHP’s editorial advisory board for their outstanding contribution to contemporary theory. OHP’s journals are independent, published under open access licenses and free of charge to readers and authors alike.”

Each journal will retain editorial independence. The press will “provide editorial and technical-development services, using the Open Journal Systems software created by the Public Knowledge Project, and it will help with distribution and promotion”. Aside from the editorial boards of the various journals, the Open Humanities Press has, according to the Chronicle, put together a “star-studded lineup of literary critics and theorists as its editorial advisory board. The panel includes Alan Badiou, professor of philosophy emeritus at France’s École Normale Supérieure; Jonathan Culler, professor of English and comparative literature at Cornell University; Gayatri Chakravorty Spivak, professor in the humanities at Columbia University; and J. Hillis Miller, professor of English at the University of California at Irvine. Another member is Stephen Greenblatt, professor of the humanities at Harvard University. In 2002, as president of the Modern Language Association, Mr. Greenblatt issued a rallying cry to humanists about the crisis in traditional scholarly publishing.”

How is this being paid for? And what is are it’s long-term goals? From the Chronicle article:

To begin with, the press will have no operating budget and no formal staff. Internet hosting is being provided gratis by ibiblio, a sort of Internet library—or “conservancy,” as they call it—based at the University of North Carolina at Chapel Hill. The founders will draw on their professional networks, and those of the journals, to get things done in the near term.

Those involved with Open Humanities Press hope to expand beyond critical theory, perhaps even beyond journals and into open-access monographs, once the enterprise has a reputation for what Mr. Ottina called “rigorous academic quality.”

“Ultimately,” he said, “the goal is to get as much academic content into an open-access distribution model as possible.”

UIUC Scholarly Communication, May 12, 2008

Prices and Ratings of Economic Textbooks

May 29th, 2008 by Karen Fischer

Ted Bergstrom, Maxim Massenkoff, and Martin Osborne have launched Prices and Ratings of Economic Textbooks (POET). From the site:

The goal of this site is to encourage instructors to take price into account when shopping for texts.

Like doctors prescribing drugs for their patients, college instructors selecting textbooks for their classes have little incentive to pay attention to prices that they themselves do not pay.

Textbook publishers do not advertise their prices. Often it is even difficult to find prices on their websites. Nowhere have we been able to find current price lists for a full selection of competing texts.

Introductory Economics and Intermediate Micro and Macro texts commonly retail for more than $150….[T]here is little doubt that successful textbooks are enormously profitable and would be so even at much lower prices.

As economists, we are not surprised that publishers seek to maximize profits. Economic theory predicts that the ratio of a seller’s price to marginal cost will be high if demand is inelastic. While publishers are unlikely to respond to moral suasion, they are likely to respond to increased price elasticity. Thus we hope that this website will have two beneficial effects. The direct effect is that it may help you find a better deal for your students. An indirect effect is that the more attention that consumers pay to prices, the more elastic will be demand, and hence the lower will be the profit-maximizing prices.

Comparison of SCImago Journal Rank Indicator with Journal Impact Factor

May 29th, 2008 by Karen Fischer

Matthew E. Falagas and three co-authors, Comparison of SCImago journal rank indicator with journal impact factor, FASEB Journal, April 11, 2008.

Abstract:

The application of currently available sophisticated algorithms of citation analysis allows for the incorporation of the “quality” of citations in the evaluation of scientific journals. We sought to compare the newly introduced SCImago journal rank (SJR) indicator with the journal impact factor (IF). We retrieved relevant information from the official Web sites hosting the above indices and their source databases. The SJR indicator is an open-access resource, while the journal IF requires paid subscription. The SJR indicator (based on Scopus data) lists considerably more journal titles published in a wider variety of countries and languages, than the journal IF (based on Web of Science data). Both indices divide citations to a journal by articles of the journal, during a specific time period. However, contrary to the journal IF, the SJR indicator attributes different weight to citations depending on the “prestige” of the citing journal without the influence of journal self-citations; prestige is estimated with the application of the PageRank algorithm in the network of journals. In addition, the SJR indicator includes the total number of documents of a journal in the denominator of the relevant calculation, whereas the journal IF includes only “citable” articles (mainly original articles and reviews). A 3-yr period is analyzed in both indices but with the use of different approaches. Regarding the top 100 journals in the 2006 journal IF ranking order, the median absolute change in their ranking position with the use of the SJR indicator is 32 (1st quartile: 12; 3rd quartile: 75). Although further validation is warranted, the novel SJR indicator poses as a serious alternative to the well-established journal IF, mainly due to its open-access nature, larger source database, and assessment of the quality of citations.

Progress Towards Public Access to Science - Harold Varmus on NIH Policy

May 29th, 2008 by Karen Fischer

Harold Varmus, Progress toward Public Access to Science, PLoS Biology, April 8, 2008. An editorial.

Varmus is the President of the Memorial Sloan-Kettering Cancer Center, co-founder of the Public Library of Science, former director of the NIH (1993-1999), and the 1989 Nobel laureate for physiology or medicine.

The National Institutes of Health (NIH) is about to cross an important threshold. Starting April 7th, the authors of research reports that describe work supported by the NIH will be required to deposit accepted manuscripts into PubMed Central (PMC), the NIH’s public digital library of full-text articles, with the understanding that the articles will be freely available for all to view no later than 12 months after publication.

This is a landmark event from several perspectives. Most obviously, it further accelerates the world-wide movement toward greater access to the scientific literature, markedly increasing the number of articles freely available to read online. By taking this step, the NIH will join other funding agencies—including the Wellcome Trust, the UK Research Councils, the European Research Council, and the Howard Hughes Medical Institute—all of which have recently required their investigators to deposit publications in PMC or equivalent public libraries, such as UKPMC, within six months to a year. Since NIH-supported investigators publish about 80,000 papers each year, many of them in journals that currently do not contribute their articles to PMC, the library will soon grow at about twice its already impressive rate. With an enlarged PMC, the virtues of full-text searches and ready access will be more obvious, encouraging still greater participation by authors of work not funded by the agencies that mandate deposition. As we all know, scientists want their work to be found, read, and cited.

The new NIH policy is especially gratifying to those of us who founded the Public Library of Science eight years ago with the goal of promoting greater access to and better use of the scientific literature through libraries like PMC. Still, not all articles in PMC are accessible on the same terms or timelines, and the public libraries and the laudable new policies from funding agencies still fall short of the full potential envisioned for a digital world of science. For articles in traditional, subscription-based journals, there is normally a six- to 12-month interval between publication and posting for public access. For that reason, the libraries are inherently archival—they are useful for searching relatively recent papers, but not for browsing most of the world’s newly published work. Furthermore, not every important new article will have been supported by enlightened funding agencies and fall within the reach of their mandates; those may not appear in PMC at all. The libraries are also limited as archives—the new policy is not retroactive, and few of the journals that participate in PMC have contributed their older papers. This is a pity, given the potential for preserving our scientific legacy in a searchable, digital form, especially at a time when most academic libraries are placing their old paper volumes in distant warehouses. So, for various reasons, the public libraries will remain incomplete, even with respect to recent work, until all authors—and publishers—commit to ensuring access to their work. Finally, unless authors modify their copyright agreements with journals before publication—something they are urged to do—journals will continue to retain inappropriate control over the use of their articles, which is currently confined largely to reading online for most articles in PMC.

In contrast, open-access journals, like those published by PLoS or BioMed Central, make their articles immediately and freely available in PMC, eliminating any extra work by the authors and any delay before the articles are fully accessible. Furthermore, these journals permit far greater use of their articles, by allowing readers to explore and reuse the texts under the terms of a Creative Commons license. These degrees of freedom are possible because access and use do not diminish revenues: open-access publishers recover their costs upfront, frequently by charging a publication fee that is paid from research expenses, rather than with subscription charges to libraries and readers. Thus the distribution and reuse of open-access content can be without limit, just as scientists and the public would wish.

The issue of ownership of published scientific papers is a vexing one, and it could pose difficulties for another recent and exciting initiative that promises to enlarge access to scholarly work. Last month, Harvard’s Faculty of Arts and Sciences (FAS) voted unanimously to require that its members provide the university with a nonexclusive license to post all their accepted articles on an openly accessible, university-maintained Web site. Because the policy might prevent some faculty, especially scientists, from publishing in journals that will not allow early free access, the policy was written to include an “opt-out” provision. This is, of course, not ideal, but much better than a policy that asks faculty to “opt-in.” Moreover, the nuisance of writing to the Provost every time a desired journal refuses to conform to the Harvard policy may cause faculty members to rethink their choice of venue, thereby minimizing use of the “opt-out” option.

As savvy journals will soon recognize, if faculty members choose to publish in other journals to comply with the new Harvard policy, the consequences will be significant—to be respected, journals need respected authors. Nevertheless, in a news article about the new Harvard policy in Science, former Congresswoman Patricia Schroeder, the chief lobbyist for the Association of American Publishers, says that, in view of the policy, “publishers may not be quite as excited to take articles from Harvard”[1]. This seems very unlikely, especially if the Harvard FAS is joined by other Harvard faculties and those on other prestigious campuses, where similar policies are under consideration.

The ownership issues are also not new. A decade ago, the American Academy of Arts and Sciences proposed that the nation’s academic work could be made more widely available through posting on university web sites. In a subsequent Policy Forum in Science [2], the authors of the Academy report recognized that this could not happen without recommended reform of copyright practices. Unfortunately, little progress has been made, largely because, then as now, traditional publishers fear major losses of subscription revenues if their journals’ articles are made freely available at the time of publication. Such losses are, of course, not going to occur if only some Harvard professors post their work in the university repository; but signs now point to more widespread participation in the United States, and some European institutions have already adopted such practices.

Open-access publishing offers a way out of this dilemma in academia, just as it offers solutions to the shortcomings of public libraries like PMC. When costs of publication are recovered from publishing fees instead of from subscriptions, and when authors retain copyrights and grant licenses to publishers, both of which happen with open-access publishing, then articles can be placed immediately in open university repositories (or in public libraries) without threats to revenues or infringements of ownership. We at PLoS celebrate these principles, while also applauding the new policies at Harvard, the NIH, and elsewhere, as welcome signs of continued progress toward public access to research literature.

Journals Find Fakery in Many Images Submitted to Support Research

May 29th, 2008 by Karen Fischer

By JEFFREY R. YOUNG, Chronicle of Higher Education, May 29, 2008

Excerpt:

Kristin Roovers was a postdoctoral fellow at the University of Pennsylvania with a bright career ahead of her—a trusted member of a research laboratory at the medical school studying the role of cell growth in diabetes.

But when an editor of The Journal of Clinical Investigation did a spot-check of one of her images for an article in 2005, Roovers’s research proved a little too perfect.

The image had dark bands on it, supposedly showing different proteins in different conditions. “As we looked at it, we realized the person had cut and pasted the exact same bands” over and over again, says Ushma S. Neill, the journal’s executive editor. In some cases a copied part of the image had been flipped or reversed to make it look like a new finding. “The closer we took a look, the more we were convinced that the data had been fabricated or manipulated in order to support the conclusions.”

As computer programs make images easier than ever to manipulate, editors at a growing number of scientific publications are turning into image detectives, examining figures to test their authenticity.

And the level of tampering they find is alarming. “The magnitude of the fraud is phenomenal,” says Hany Farid, a computer-science professor at Dartmouth College who has been working with journal editors to help them detect image manipulation. Doctored images are troubling because they can mislead scientists and even derail a search for the causes and cures of disease.

Converting High Energy Physics Publishing from Subscription to Open Access

May 29th, 2008 by Karen Fischer

The Audacity of SCOAP3, Ivy Anderson, Director of Collections, California Digital Library

Introductory Note: SCOAP3 (Sponsoring Consortium for Open Access Publishing in Particle Physics) is a grand experiment. It is a new model for scholarly communication proposed by a community of scientists. Physicists interested in expanding access to their literature have designed a novel approach to garner support from individual libraries, library consortia, research institutions, and even nation states to turn a core set of journals in the high energy physics (HEP) discipline into open access publications. SCOAP3 aims to convert all HEP literature published in high-quality journals, existing and new. This operation will be facilitated by the fact that seven journals carry the large majority of the literature in the field. These journals are published by the American Physical Society (APS), SISSA-IOP, Elsevier, and Springer. Already leaders in making their science freely accessible through the e-print service arXiv, the scientists are now proposing to make a substantial portion of the published literature open access as well.

Access to Legal Scholarship

May 29th, 2008 by Karen Fischer

For a variety of reasons, legal scholarship is an excellent laboratory for experiments in changing the traditional structures and economics of scholarship. Both open access and informal forms of scholarship have been more readily adopted and more quickly influential in law than in other fields. The unusual structure of most legal scholarship is a partial explanation for these facts, but many of the experiences and observations made in the legal arena offer substantive lessons for scholarship in other fields.

Nowhere are these experiences and observations better synthesized than in a recent article by Richard Danner, Ruffy Research Professor of Law and Associate Dean for Information Services at Duke University Law School. In “Applying the Access Principle in Law: the Responsibilities of the Legal Scholar,” Danner does a superb job of explaining what is unusual about legal scholarship, what the experiences of changing the publication models have been and what needs and responsibilities for individual scholars remain.

One of Danner’s observations particularly struck me when I read this article, and that impression was confirmed by a conversation I had this week with several librarians. Contrary to the oft-repeated claim that open access will inevitably lead to loss of subscription income for publishers, Danner documents the experience of Duke Law School when it moved all of its journals to open access web accessibility. As Danner tells the story, the school had concluded that the expected loss of subscription income would be offset by the values gained from greater exposure to its 6 print journals. But in fact, there was almost no such decline in print subscriptions, even after 10 years of free access. Only one journal showed an overall decline (of about 2%) over that time period, while four showed significant increases in subscriptions. The sixth journal experienced a small increase. Clearly better access leads to subscriptions from readers who otherwise would not have known about the journals, especially the specialized ones, which exhibited the largest increases. This week a librarian I was speaking with confirmed that she had also experienced this unusual form of marketing, when faculty have asked her to subscribe to journals they have discovered through open Web accessibility.

Overall, Danner’s article is a masterful analysis of the structure of publishing in a particular field and how the “access principle,” a concept taken from John Willinsky’s book of the same name, could transform a field of scholarship. In spite of the oddities of legal scholarship, Danner is very successful at offering both an analysis and a call to action that deserve to be translated and applied in other fields.

Kevin Smith, Scholarly Communication @ Duke, May 5, 2008

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